Yonatan Grad: search on Z-Library

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1

Aggregated mobility data could help fight COVID-19

Buckee, Caroline O., Balsari, Satchit, Chan, Jennifer, Crosas, MercÃ¨, Dominici, Francesca, Gasser, Urs, Grad, Yonatan H., Grenfell, Bryan, Halloran, M. Elizabeth, Kraemer, Moritz U. G., Lipsitch, Mar

Journal:

Year:

2020

Language:

english

File:

PDF, 315 KB

english, 2020

2

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

Eyre, David W., De Silva, Dilrini, Cole, Kevin, Peters, Joanna, Cole, Michelle J., Grad, Yonatan H., Demczuk, Walter, Martin, Irene, Mulvey, Michael R., Crook, Derrick W., Walker, A. Sarah, Peto, Tim

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2017

Language:

english

File:

PDF, 275 KB

english, 2017

3

Weak Epistasis May Drive Adaptation in Recombining Bacteria

Arnold, Brian J., Gutmann, Michael U., Grad, Yonatan H., Sheppard, Samuel K., Corander, Jukka, Lipsitch, Marc, Hanage, William P.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.18 MB

english, 2018

4

Comparing nonpharmaceutical interventions for containing emerging epidemics

Peak, Corey M., Childs, Lauren M., Grad, Yonatan H., Buckee, Caroline O.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 998 KB

english, 2017

5

[BMJ Publishing Group Ltd STI and HIV World Congress Abstracts, July 9–12 2017, Rio de Janeiro, Brazil - ()] Epidemiology, Monitoring and Evaluation - P3.16 Impact of rapid susceptibility profiling on the emergence and spread of antibiotic resistance in gonorrhoea

Tuite, Ashleigh, Hsu, Katherine, Gift, Thomas L, Salomon, Joshua A, Grad, Yonatan H

Language:

english

File:

PDF, 70 KB

english

6

The role of âspilloverâ in antibiotic resistance

Olesen, Scott W., Lipsitch, Marc, Grad, Yonatan H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.40 MB

2020

7

Cross-reactive memory T cells and herd immunity to SARS-CoV-2

Lipsitch, Marc, Grad, Yonatan H., Sette, Alessandro, Crotty, Shane

Journal:

Nature Reviews Immunology

Year:

2020

File:

PDF, 1.18 MB

2020

8

Computational and Experimental Identification of C. elegans microRNAs

Yonatan Grad, John Aach, Gabriel D Hayes, Brenda J Reinhart, George M Church, Gary Ruvkun, John Kim

Journal:

Year:

2003

Language:

english

File:

PDF, 406 KB

english, 2003

9

Trends in antibiotic susceptibility in Staphylococcus aureus in Boston, Massachusetts, 2000-2014

Kanjilal, Sanjat, Sater, Mohamad R. Abdul, Thayer, Maile, Lagoudas, Georgia K., Kim, Soohong, Blainey, Paul C., Grad, Yonatan H.

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 1.95 MB

english, 2017

10

Trends in outpatient antibiotic use and prescribing practice among US older adults, 2011-15: observational study

Olesen, Scott W, Barnett, Michael L, MacFadden, Derek R, Lipsitch, Marc, Grad, Yonatan H

Journal:

Year:

2018

Language:

english

File:

PDF, 371 KB

english, 2018

11

Bitter Pills

Grad, Yonatan H., Seifter, Julian L., Levy, Bruce D., Loscalzo, Joseph

Journal:

Boston Medical and Surgical Journal

Year:

2010

Language:

english

File:

PDF, 931 KB

english, 2010

12

[BMJ Publishing Group Ltd STI and HIV World Congress Abstracts, July 9–12 2017, Rio de Janeiro, Brazil - ()] Systems Biology and Novel Technologies For Molecular Analysis and Diagnosis - P1.16 Acquisition of azithromycin resistance in neisseria gonorrhoeae via intragenus recombination

Wadsworth, Crista, Grad, Yonatan

Language:

english

File:

PDF, 82 KB

english

13

Vaccine waning and mumps re-emergence in the United States

Lewnard, Joseph A., Grad, Yonatan H.

Journal:

Science Translational Medicine

Year:

2018

Language:

english

File:

PDF, 834 KB

english, 2018

14

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

Arnold, Brian, Sohail, Mashaal, Wadsworth, Crista, Corander, Jukka, Hanage, William P, Sunyaev, Shamil, Grad, Yonatan H, Pond, Sergei Kosakovsky

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 2.99 MB

english, 2019

15

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

BÅinda, Karel, Callendrello, Alanna, Ma, Kevin C., MacFadden, Derek R., Charalampous, Themoula, Lee, Robyn S., Cowley, Lauren, Wadsworth, Crista B., Grad, Yonatan H., Kucherov, Gregory, OâGrady, Ju

Journal:

Nature Microbiology

Year:

2020

File:

PDF, 2.57 MB

2020

16

Clinically prevalent mutations in Mycobacterium tuberculosis alter propionate metabolism and mediate multidrug tolerance

Hicks, Nathan D., Yang, Jian, Zhang, Xiaobing, Zhao, Bing, Grad, Yonatan H., Liu, Liguo, Ou, Xichao, Chang, Zhili, Xia, Hui, Zhou, Yang, Wang, Shengfen, Dong, Jie, Sun, Lilian, Zhu, Yafang, Zhao, Yanl

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

17

Azithromycin susceptibility in Neisseria gonorrhoeae and seasonal macrolide use

Olesen, Scott W, Torrone, Elizabeth A, Papp, John R, Kirkcaldy, Robert D, Lipsitch, Marc, Grad, Yonatan H

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 642 KB

english, 2018

18

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses

Chang, Hsiao-Han, Huber, Roland G, Bond, Peter J, Grad, Yonatan H, Camerini, David, Maurer-Stroh, Sebastian, Lipsitch, Marc

Journal:

Bulletin of the World Health Organization

Year:

2017

Language:

english

File:

PDF, 6.91 MB

english, 2017

19

Photoinactivation of Neisseria gonorrhoeae: A Paradigm-Changing Approach for Combating Antibiotic-Resistant Gonococcal Infection

Wang, Ying, Ferrer-Espada, Raquel, Baglo, Yan, Goh, Xueping S, Held, Kathryn D, Grad, Yonatan H, Gu, Ying, Gelfand, Jeffrey A, Dai, Tianhong

Journal:

The Journal of Infectious Diseases

Year:

2019

File:

PDF, 1.04 MB

2019

20

Impact of Rapid Susceptibility Testing and Antibiotic Selection Strategy on the Emergence and Spread of Antibiotic Resistance in Gonorrhea

Tuite, Ashleigh R, Gift, Thomas L, Chesson, Harrell W, Hsu, Katherine, Salomon, Joshua A, Grad, Yonatan H

Journal:

The Journal of Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 856 KB

english, 2017

21

Applications of genomics to slow the spread of multidrug-resistant Neisseria gonorrhoeae

Mortimer, Tatum D., Grad, Yonatan H.

Journal:

Annals of the New York Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 325 KB

english, 2018

22

Cholera Modeling

Grad, Yonatan H., Miller, Joel C., Lipsitch, Marc

Journal:

Year:

2012

Language:

english

File:

PDF, 472 KB

english, 2012

23

Biodiversity and hypervirulence of Listeria monocytogenes

Grad, Yonatan H, Fortune, Sarah M

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 238 KB

english, 2016

24

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

Williamson, Deborah A., Chow, Eric P. F., Gorrie, Claire L., Seemann, Torsten, Ingle, Danielle J., Higgins, Nasra, Easton, Marion, Taiaroa, George, Grad, Yonatan H., Kwong, Jason C., Fairley, Christop

Journal:

Nature Communications

Year:

2019

File:

PDF, 935 KB

2019

25

Genetic determinants of genus—Level glycan diversity in a bacterial protein glycosylation system

Hadjineophytou, Chris, Anonsen, Jan Haug, Wang, Nelson, Ma, Kevin C., Viburiene, Raimonda, Vik, Åshild, Harrison, Odile B., Maiden, Martin C. J., Grad, Yonatan H., Koomey, Michael, Casadesús, Josep

Journal:

Year:

2019

File:

PDF, 2.76 MB

2019

26

Case-based surveillance of antimicrobial resistance with full susceptibility profiles

Ryu, Sukhyun, Cowling, Benjamin J, Wu, Peng, Olesen, Scott, Fraser, Christophe, Sun, Daphne S, Lipsitch, Marc, Grad, Yonatan H

Journal:

JAC-Antimicrobial Resistance

Year:

2019

File:

PDF, 349 KB

2019

27

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

Grad, Yonatan H, Kirkcaldy, Robert D, Trees, David, Dordel, Janina, Harris, Simon R, Goldstein, Edward, Weinstock, Hillard, Parkhill, Julian, Hanage, William P, Bentley, Stephen, Lipsitch, Marc

Journal:

The Lancet Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 407 KB

english, 2014

28

Reply to Allan-Blitz and Klausner

Grad, Yonatan H., Lipsitch, Marc

Journal:

The Journal of Infectious Diseases

Year:

2016

File:

PDF, 118 KB

2016

29

Deep sequencing of RSV from an adult challenge study and from naturally infected infants reveals heterogeneous diversification dynamics

Lau, Jessica W., Kim, Young-In, Murphy, Ryan, Newman, Ruchi, Yang, Xiao, Zody, Michael, DeVincenzo, John, Grad, Yonatan H.

Journal:

Year:

2017

Language:

english

File:

PDF, 1024 KB

english, 2017

30

Impact of species diversity on the design of RNA-based diagnostics for antibiotic resistance in Neisseria gonorrhoeae

Wadsworth, Crista B., Sater, Mohamad R.A., Bhattacharyya, Roby P., Grad, Yonatan H.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

File:

PDF, 3.00 MB

2019

31

Multi-strain Tn-Seq reveals common daptomycin resistance determinants in Staphylococcus aureus

Coe, Kathryn A., Lee, Wonsik, Stone, Madeleine C., Komazin-Meredith, Gloria, Meredith, Timothy C., Grad, Yonatan H., Walker, Suzanne, Peschel, Andreas

Journal:

Year:

2019

Language:

english

File:

PDF, 5.20 MB

english, 2019

32

Potential Biases Arising from Epidemic Dynamics in Observational Seroprotection Studies

Kahn, Rebecca, Kennedy-Shaffer, Lee, Grad, Yonatan H, Robins, James M, Lipsitch, Marc

Journal:

American Journal of Epidemiology

Year:

2020

File:

PDF, 816 KB

2020

33

Genomic epidemiology of gonococcal resistance to extended spectrum cephalosporins, macrolides, and fluoroquinolones in the US, 2000-2013

Grad, Yonatan H., Harris, Simon R., Kirkcaldy, Robert D., Green, Anna G., Marks, Debora S., Bentley, Stephen D., Trees, David, Lipsitch, Marc

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 3.83 MB

english, 2016

34

Cumulative Probability of Receiving an Antibiotic Prescription over Time

Olesen, Scott W., MacFadden, Derek, Grad, Yonatan H.

Journal:

New England Journal of Medicine

Year:

2019

File:

PDF, 391 KB

2019

35

Adaptive guidelines for the treatment of gonorrhea to increase the effective life span of antibiotics among men who have sex with men in the United States: A mathematical modeling study

Yaesoubi, Reza, Cohen, Ted, Hsu, Katherine, Gift, Thomas L., Chesson, Harrell, Salomon, Joshua A., Grad, Yonatan H., Low, Nicola

Journal:

Year:

2020

File:

PDF, 1.24 MB

2020

36

Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires

Watkins, Eleanor R., Grad, Yonatan H., Gupta, Sunetra, Buckee, Caroline O.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

37

Testing for gonorrhoea should routinely include the pharynx

Whittles, Lilith K, Didelot, Xavier, Grad, Yonatan H, White, Peter J

Journal:

The Lancet Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 51 KB

english, 2018

38

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

Williamson, Deborah A., Chow, Eric P. F., Gorrie, Claire L., Seemann, Torsten, Ingle, Danielle J., Higgins, Nasra, Easton, Marion, Taiaroa, George, Grad, Yonatan H., Kwong, Jason C., Fairley, Christop

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 935 KB

english, 2019

39

[BMJ Publishing Group Ltd Abstracts for the STI & HIV World Congress (Joint Meeting of the 23rd ISSTDR and 20th IUSTI), July 14â17, 2019, Vancouver, Canada - ()] Oral Presentations - O04.1âNovel pathway to ceftriaxone resistance in clinical isolates of N. gonorrhoeae via point mutations in the RNA polymerase

Palace, Samantha, Wang, Yi, Rubin, Daniel, Grad, Yonatan

File:

PDF, 89 KB

40

Antimicrobial Resistance in Neisseria gonorrhoeae

Cristillo, Anthony D., Bristow, Claire C., Torrone, Elizabeth, Dillon, Jo-Anne, Kirkcaldy, Robert D., Dong, Huan, Grad, Yonatan H., Nicholas, Robert A., Rice, Peter A., Lawrence, Kenneth, Oldach, Davi

Journal:

Sexually Transmitted Diseases

Year:

2019

File:

PDF, 197 KB

2019

41

Impact of species diversity on the design of RNA-based diagnostics for antibiotic resistance in Neisseria gonorrhoeae

Wadsworth, Crista B., Sater, Mohamad R.A., Bhattacharyya, Roby P., Grad, Yonatan H.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

Language:

english

File:

PDF, 3.00 MB

english, 2019

42

Use of whole-genome sequencing data to analyze 23S rRNA-mediated azithromycin resistance

Johnson, Steven R., Grad, Yonatan, Abrams, A. Jeanine, Pettus, Kevin, Trees, David L.

Journal:

International Journal of Antimicrobial Agents

Year:

2017

Language:

english

File:

PDF, 179 KB

english, 2017

43

Multidrug-resistant Neisseria gonorrhoeae : implications for future treatment strategies

MacFadden, Derek R, Lipsitch, Marc, Olesen, Scott W, Grad, Yonatan

Journal:

The Lancet Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

44

Antibiotic Consumption and Antibiotic Resistance Across Organisms, Drugs, and Consumer Groups

Olesen, Scott, Barnett, Michael, MacFadden, Derek, Lipsitch, Marc, Grad, Yonatan H

Journal:

Open Forum Infectious Diseases

Year:

2017

File:

PDF, 710 KB

2017

45

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

Hicks, Allison L., Wheeler, Nicole, Sánchez-Busó, Leonor, Rakeman, Jennifer L., Harris, Simon R., Grad, Yonatan H., Ioerger, Thomas R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.82 MB

english, 2019

46

Implications of test characteristics and population seroprevalence on âimmune passportâ strategies

Larremore, Daniel B, Bubar, Kate M, Grad, Yonatan H

Journal:

Clinical Infectious Diseases

Year:

2020

File:

PDF, 419 KB

2020

47

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

Järvenpää, Marko, Sater, Mohamad R. Abdul, Lagoudas, Georgia K., Blainey, Paul C., Miller, Loren G., McKinnell, James A., Huang, Susan S., Grad, Yonatan H., Marttinen, Pekka, Kasson, Peter M

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.77 MB

english, 2019

48

Efflux Pump Antibiotic Binding Site Mutations Are Associated with Azithromycin Nonsusceptibility in Clinical Neisseria gonorrhoeae Isolates

Ma, Kevin C., Mortimer, Tatum D., Grad, Yonatan H., Shafer, William M., Gilmore, Michael S.

Journal:

Year:

2020

File:

PDF, 527 KB

2020

49

Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae

Ma, Kevin C., Mortimer, Tatum D., Duckett, Marissa A., Hicks, Allison L., Wheeler, Nicole E., SÃ¡nchez-BusÃ³, Leonor, Grad, Yonatan H.

Journal:

Nature Communications

Year:

2020

File:

PDF, 931 KB

2020

50

Azithromycin Resistance through Interspecific Acquisition of an Epistasis-Dependent Efflux Pump Component and Transcriptional Regulator in Neisseria gonorrhoeae

Wadsworth, Crista B., Arnold, Brian J., Sater, Mohamad R. Abdul, Grad, Yonatan H., Shafer, William, Gilmore, Michael S.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.81 MB

english, 2018

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